The EvoDevOmics Network is supported by the grant RED2024-153825-T funded by MICIU/AEI/ 10.13039/501100011033
Publications
119 publicaciones · 12 grupos
A single-cell multiomics roadmap of zebrafish spermatogenesis reveals regulatory principles of male germline formation
Molecular Systems Biology, 22(1):42–68
Journal of Comparative Neurology, 534(3):e70154
A smartphone analogy to explore the origin of animals
The EMBO Journal
Independent origins of spicules reconcile palaeontological and molecular evidence of sponge evolutionary history
Science Advances, 12(2): eadx1754
Heterochrony in orthodenticle expression is associated with ommatidial size variation between Drosophila species
BMC Biology, 23, 34
Non-CG DNA methylation in animal genomes
Nature Genetics, 57(10):2395–2407
Molecular Biology and Evolution, 42(1):msae260
PNAS (in press)
The aging factor EPS8 induces disease-related protein aggregation through RAC signaling hyperactivation
Nature Aging, 5(9):1750–1770
A postnatal molecular switch drives activity-dependent maturation of parvalbumin interneurons
Cell, 188(20):5555–5575.e26
Core splicing architecture and early spliceosomal recognition determine microexon sensitivity to SRRM3/4
Nature Structural & Molecular Biology, 32(10), 2022–2034
A Highly Conserved Neuronal Microexon in DAAM1 Controls Actin Dynamics, RHOA/ROCK Signaling, and Memory Formation
Nature Communications, 16(1): 4210
Phenotypic impact of individual conserved neuronal microexons and their master regulators in zebrafish
eLife, 13:RP104275
Nature Ecology & Evolution (in press)
A single-cell multiomics roadmap of zebrafish spermatogenesis reveals regulatory principles of male germline formation
Molecular Systems Biology, 22:42
CRISPR-Cas9 genome editing in Corallochytrium limacisporum, a key species for understanding animal origins
Open Biology, 15: 250066
Role of CEBPa in trophectoderm competence installment
Science Advances, 11(48):eady1693
Molecular Ecology, 34(16), p.e70010
Molecular Biology and Evolution, 42(7), p.msaf145
mBio, 16(6), pp.e02019-24
No mate, no problem: molecular mechanisms involved in parthenogenesis in the cosmopolitan earthworm Aporrectodea trapezoides
Molecular Ecology, 34: p. e70010
Unravelling the evolutionary relationships in Haplosyllis annelids (Syllidae) with emphasis in the Indo-Pacific species and the djiboutiensis cryptic complex
Zoologica Scripta, 54: 684–707
Gene regulatory dynamics during the development of a paleopteran insect, the mayfly Cloeon dipterum
Development, dev.203017
Gill regeneration in the mayfly Cloeon uncovers new molecular pathways in insect regeneration
Open Biology, 14, 240118
Extensive DNA methylome rearrangement during early lamprey embryogenesis
Nature Communications, 15(1):1977
Genome Research, 34(3):426–440
Nature Ecology & Evolution, 8(3):519–535
Neurogenesis in Caenorhabditis elegans
Genetics, iyae116
Nature Ecology & Evolution
Alternative splicing decouples local from global PRC2 activity
Molecular Cell, 84(6), 1049–1061.e8
EMBO Journal, 43(17): 3604–3626
Development, 151(16): dev202278
Nature Ecology & Evolution, 8(3):519–535
Ichthyosporea: a window into the origin of animals
Communications Biology, 7:915
Mouse oocytes sequester aggregated proteins in degradative super-organelles
Cell, S0092-8674(24)00068-0
The ISME Journal, p.wrad030
Communications Biology, 7(1), p.1015
Interlocking of co-opted developmental gene networks in Drosophila and the evolution of pre-adaptive novelty
Nature Communications, 14, 5730
Evolutionary conservation of embryonic DNA methylome remodelling in distantly related teleost species
Nucleic Acids Research, 51(18):9658–9671
Zoological Letters, 9(1):23
BioTechniques, 74(5):243–278
In: Hox Modules in Evolution and Development (ed. Ferrier D.E.F.). CRC Press, pp. 121–
Forkhead transcription factor FKH-8 cooperates with RFX in the direct regulation of sensory cilia in Caenorhabditis elegans
eLife, 12:e89702
Pancreatic microexons regulate islet function and glucose homeostasis
Nature Metabolism, 5(2), 219–236
In: Life and Mind. Interdisciplinary Evolution Research, vol 8. Springer, Cham
A Yap-dependent mechanoregulatory program sustains cell migration for embryo axis assembly
Nature Communications, 14:2804
Mutation of vsx genes in zebrafish highlights the robustness of the retinal specification network
eLife, 12:e85594
The Origin of Metazoan Multicellularity: A Potential Microbial Black Swan Event
Annual Review of Microbiology, 77:499–516
Chemical factors induce aggregative multicellularity in a close unicellular relative of animals
PNAS, 110(18): e2216668120
On the origin and evolution of RNA editing in metazoans
Cell Reports, 42(2), 112112
Active DNA demethylation of developmental cis-regulatory regions predates vertebrate origins
Science Advances, 8(48):eabn2258
Proceedings of the Royal Society B: Biological Sciences, 289(1980):20220667
Frontiers in Cell and Developmental Biology, 10:917101
BMC Biology, 20(1):76
Transcription factors from multiple families ensure enhancer selectivity and robust neuron terminal differentiation
Genome Research, 32(3):459–473
Specialization of the photoreceptor transcriptome by Srrm3-dependent microexons is required for outer segment maintenance and vision
PNAS, 119(29), e2117090119
The X-linked splicing regulator MBNL3 has been co-opted to restrict placental growth in eutherians
PLoS Biology, 20(4), e3001615
A developmentally programmed splicing failure contributes to DNA damage response attenuation during mammalian zygotic genome activation
Science Advances, 8(15), eabn4935
Parallel evolution of a splicing program controlling neuronal excitability in flies and mammals
Science Advances, 8(4), eabk0445
Science Advances, 8(48): eabn2258
Genome Biology, 23, 243
Divergent genomic trajectories predate the origin of animals and fungi
Nature, 609, 747–753
Regulation of sedimentation rate shapes the evolution of multicellularity in a close unicellular relative of animals
PLoS Biology, 20(3): e3001551
DRP1 levels determine the apoptotic threshold during embryonic differentiation through a mitophagy-dependent mechanism
Developmental Cell, 57(11):1316–1330.e7
A developmentally programmed splicing failure contributes to DNA damage response attenuation during mammalian zygotic genome activation
Science Advances, 8(15):eabn4935
The X-linked splicing regulator MBNL3 has been co-opted to restrict placental growth in eutherians
PLoS Biology, 20(4):e3001615
BMC Genomics, 23(1), p.17
On the hormonal control of posterior regeneration in the annelid Platynereis dumerilii
Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 1–18
Microbiomes of microscopic marine invertebrates do not reveal signatures of phylosymbiosis
Nature Microbiology, 7(6), 810–819
Distinct patterns of gene expression during regeneration and asexual reproduction in the annelid Pristina leidyi
JEZ-B: Molecular and Developmental Evolution, 338(7), 405–420
Regulation of metamorphosis in neopteran insects is conserved in the paleopteran Cloeon dipterum (Ephemeroptera)
PNAS, 118(34), e2105272118
Developmental Accumulation of Gene Body and Transposon Non-CpG Methylation in the Zebrafish Brain
Frontiers in Cell and Developmental Biology, 9:643603
Nature, 599:431–435
Frontiers in Cell and Developmental Biology, 9:700827
Brain Behaviour and Evolution, 96(4-6):305–317
Genetic Mechanism for the Cyclostome Cerebellar Neurons Reveals Early Evolution of the Vertebrate Cerebellum
Frontiers in Cell and Developmental Biology, 9:700860
Notch independent functions of LAG-1/CSL control terminal differentiation, maintenance and gene expression plasticity of a chemosensory neuron
PLOS Biology, 19(7):e3001334
CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression
Nature Communications, 12:5415
Analysis of gene network bifurcation during optic cup morphogenesis in zebrafish
Nature Communications, 12:3866
Stable transfection in protist Corallochytrium limacisporum identifies novel cellular features among unicellular animal relatives
Current Biology, 31, 4104–4110
Open Biology, 11: 200359
ACME dissociation: a versatile cell fixation-dissociation method for single-cell transcriptomics
Genome Biology, 22(1), 1–34
Nature Communications, 11, 2631
Developmental remodelling of non-CG methylation at satellite DNA repeats
Nucleic Acids Research, 48(22):12675–12688
Evolution of DNA Methylome Diversity in Eukaryotes
Journal of Molecular Biology, 432(6):1687–1705
PBX1 is a terminal selector of olfactory bulb dopaminergic neurons
Development, 147(8):dev186841
Molecular Biology and Evolution, 37(10):2857–2864
Nature Communications, 11, 2631
Patterning the Vertebrate Retina with Morphogenetic Signaling Pathways
Neuroscientist, 26:185–196
Nature Communications, 11, 3676
Molecular Biology and Evolution, 37(12), 3485–3506
Establishment of the mayfly Cloeon dipterum as a new model system to investigate insect evolution
EvoDevo, 10, 6
How Do Morphological Novelties Evolve? Novel Approaches to Define Novel Morphologies
Old Questions and Young Approaches to Animal Evolution. Springer International Publishing, 107–132
Human eye conditions: insights from the fly eye
Human Genetics, 138, 973–991
Retention of paternal DNA methylome in the developing zebrafish germline
Nature Communications, 10(1):3054
Proneural factors Ascl1 and Neurog2 contribute to neuronal subtype identities by establishing distinct chromatin landscapes
Nature Neuroscience, 22(6):897–908
Current Biology, 29(11), pp.R401–R402
Delegating sex: differential gene expression in stolonizing syllids uncovers the hormonal control of reproduction in Annelida
Genome Biology and Evolution, 11(1):295–318
Functions and mechanisms of epigenetic inheritance in animals
Nature Reviews Molecular Cell Biology, 19(12):774–790
Communications Biology, 1:121
A transcription factor collective defines the HSN serotonergic neuron regulatory landscape
eLife
Nature, 564: 64–70
Scale-invariant patterning by size-dependent inhibition of Nodal signaling
Nature Cell Biology, 20:1032–42
Phylogenetic relationships and evolution of reproductive modes within flattened syllids with the description of a new genus and five new species
Invertebrate Systematics, 32, 224–251
Straightening the striped chaos: systematics and evolution of Trypanosyllis and the case of its pseudo-cryptic type species Trypanosyllis krohnii (Annelida, Syllidae)
Zoological Journal of the Linnean Society, 179: 492–540
The Syllis gracilis species complex: a molecular approach to a difficult taxonomic problem (Annelida, Syllidae)
Molecular Phylogenetics and Evolution, 109: 138–150
Molecular Biology and Evolution, 33(9):2401–2416
Nature Reviews Genetics, 17(7):379–391
Nature Genetics, 48:427–437
JNK controls the onset of mitosis in planarian stem cells and triggers apoptotic cell death required for regeneration and remodeling
PLoS Genetics, 10:e1004400
MicroRNAs control the apoptotic threshold in primed pluripotent stem cells through regulation of BIM
Genes & Development, 28(17):1873–8
Competitive interactions eliminate unfit embryonic stem cells at the onset of differentiation
Developmental Cell, 26(1):19–30
Wnt signaling in planarians: new answers to old questions
International Journal of Developmental Biology, 56:53–65
Dishevelled is essential for neural connectivity and planar cell polarity in planarians
PNAS, 108:2813–18
Crosstalk between Nodal/activin and MAPK p38 signaling is essential for anterior-posterior axis specification
Current Biology, 21(15):1289–95
Science, 330(6009):1381–5
An early developmental role for miRNAs in the maintenance of extra-embryonic stem cells in the mouse embryo
Developmental Cell, 19(2):207–19
Comparison of extraembryonic expression of Eomes and Cdx2 in pregastrulation chick and mouse embryo unveil regulatory changes along evolution
Developmental Dynamics, 239(2):620–9
